Welcome to aureme’s documentation!¶
Contents¶
- How to use Docker?
- How to use the AuReMe workspace (default workflow)
- FAQ
- Can I have a sample of AuReMe?
- How to convert files to different formats?
- How to manage growth medium?
- How to manage metabolic network compartment?
- What are “artefacts”?
- How to explore the topology of a metabolic network?
- How to manage the log files?
- How to reproduce studies?
- How to create a new ‘à-la-carte’ workflow?
- How to choose another reference database?
- What is checked in my input files?
- What is the Makefile?
- What is the config.txt file?
- How to regenerate a new database version?
- How to map a metabolic network on another database?
- How to generate report on results?
- How to generate Wiki?
- How to connect to Pathway-tools?
- How to set an objective reaction?
- How to process Flux Balance Analysis?